Glyma10g25560 - SoyBase

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Report for Sequence Feature Glyma10g25560

Feature Type:	gene_model
Chromosome:	Gm10
Start:	33469684
stop:	33470807
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g25560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G24020	AT	Annotation by Michelle Graham. TAIR10: Disease resistance-responsive (dirigent-like protein) family protein \| chr3:8678827-8679558 FORWARD LENGTH=243	SoyBase	E_val: 7.00E-102	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR21495	Panther	NUCLEOPORIN-RELATED	JGI		ISS
PTHR21495:SF10	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF03018	PFAM	Dirigent-like protein	JGI		ISS
UniRef100_D7L4A6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance-responsive family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L4A6_ARALL	SoyBase	E_val: 2.00E-100	ISS
UniRef100_I1LAL0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LAL0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g25560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g25560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g127500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g25560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g25560

Limit To All Plant Sequences

>Glyma10g25560.1   sequence type=CDS   gene model=Glyma10g25560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATTTCATTCCACATCCTCTCAAAGATTCATTACCTTATAGAAAAATGGCATCTACATCTGAAACACTAGGAAACAAGATGGCTATGGGAATGGGATCATTAACTGCAGCTTCCCTGGCAATGTTGCTTGCTTTTGCGAATTTGGCAACGACTATAGCAACAGTTGACCCCATTGCAGCCACAGGGAAAGAACATGTTATTGAGCTATACATGCATGACATTCTAGGGGGCAGCAACCCGACGGCTCGACCTGTAACTGGCTTGCTGGGGAGCATATACAGTGGTCAAGTACCCTTTGCAATGCCAGTAGGATTCAACACCCAAGGGACTCCCATCCCCAATGCCAATGGTGCTAACCCCACCGTCAATGGAGTTTTTGGTACCCCTTTAGGTACTGGATTGGCTGGTACTTCATTTGCACCAAACTCAGGTAATAACAATCAAAACAATGCCCAGCTGCAGTTAGGACCTGATGGACTGGGACTAGGCTTTGGTACAATCACTGCTATTGATGACATATTGACCTCTCAACCTGAGTTGGGGTCCCAAATAGTTGGGAAGGCTCAAGGGGTGTATGTGGCAAGTTCAGCAGATGGGACAAGACAGATGATGGCATTTACAGCCCTCTTTGAAGGAGGGGAATATGGTGATAGCTTGAACTTTTATGGCTTGTACAGGATAGGAAGCACCATGTCACAAATATCTGTGATGGGGGGCACAGGGAAGTTCAAGAATGCAAGGGGGTTTGCTGAACTGAGAGCTCTTATCCCACCAGGACAGATTGCCACTGATGGTGCAGAGACACTGCTGAGGATCACTATCTATTTGAAATACTGA

Predicted protein sequences of Glyma10g25560

Limit To All Plant Sequences

>Glyma10g25560.1   sequence type=predicted peptide   gene model=Glyma10g25560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHFIPHPLKDSLPYRKMASTSETLGNKMAMGMGSLTAASLAMLLAFANLATTIATVDPIAATGKEHVIELYMHDILGGSNPTARPVTGLLGSIYSGQVPFAMPVGFNTQGTPIPNANGANPTVNGVFGTPLGTGLAGTSFAPNSGNNNQNNAQLQLGPDGLGLGFGTITAIDDILTSQPELGSQIVGKAQGVYVASSADGTRQMMAFTALFEGGEYGDSLNFYGLYRIGSTMSQISVMGGTGKFKNARGFAELRALIPPGQIATDGAETLLRITIYLKY*

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